The Iteration Strategy

Determination of the amino acid sequence of bioactive components of soluble peptide libraries by combination of screening and synthesis

The principle of the iteration strategy was first described under the name of "back searching" in the document notarized in 1982 then it was published by Geysen et al. in 1986 and Houghten et al. in 1991.The procedure is visualized by the synthesis and screening of a tripeptide library of 27 components. The 27 trimers synthesized from three different (yellow, blue and red) monomers (amino acids). Green circles symbolize the solid support. Before mixing operations of the synthesis samples are removed for later use. After the last coupling step the samples are not mixed.
 

Synthesis in 3 coupling steps                  Samples
                                                           removed



 
 

Determination of the amino acid sequence
of the bioactive peptide the tripeptide library

 Coupling position 3.After the last coupling cycle of the synthesis of the library, the samples are not mixed. They are cleaved and screened separately. The components of the three samples are differing only in the amino acid occupying coupling position 3 and this makes possible to identify the terminal residue of the active peptide. If, after cleavage, the sample marked by + shows activity in screening, it means, that the N-terminal amino acid is the “red” one. The other two amino acids are not yet known.


Sequence of active tripeptide

Coupling position 2. This “red” amino acid is then coupled to each of the three samples taken in the dipeptide stage of the synthesis before mixing. The products differ only in the amino acid occupying coupling position 2. The result of the screening experiment carried out after cleavage (marked by +), identifies this residue as the “blue” amino acid.

                                                    Coupling                   Testing after cleavage

                                                                                                        Sequence of active tripeptide

Coupling position 1. By going back to the first stage of the synthesis and coupling to the three unmixed samples the already identified “blue” then the “red” amino acid, and screening after the cleavages, the C-terminal amino acid can be identified (yellow).

Couplings                                                              Testing after cleavage

See the final sequence of active tripeptide at the bottom of the figure.